Qodex.ai
Qodex.ai
Introduction
Rat Genome Database
annotations-count/{acc Id}-{species Type Key}/{include Children}
Returns annotation count for ontology accession ID and object typeReturns annotation count for ontology accession ID and speicies
annotations-count/{acc Id}
Returns annotation count for ontology accession ID
annotations-rgd Id/{rgd Id}
Returns a list of annotations by RGD ID and ontology prefixReturns a list of annotations by RGD ID
annotations-{acc Id}
Returns a list of annotations by RGD ID and ontology term accession IDReturns a list annotations for an ontology term or a term and it's children
annotations
Returns a list of annotations for a referenceReturns a list ontology term accession IDs annotated to an rgd object
genes
Return a list of genes for an alias and speciesReturn a list of all genes with position information for an assemblyReturn a list of gene orthologsReturn a list of genes by keyword and species type keyGet a gene record by RGD IDReturn a list of genes position and map keyGet a gene record by symbol and species type keyReturn a list of genes for an affymetrix IDReturn a list of genes annotated to an ontology termReturn a list of all genes for a species in RGDReturn a list of gene alleles
lookup
Return a Map of species type keys available in RGDReturn a list assembly maps for a speciesReturns a list of gene types avialable in RGD
pathways
Return a list of pathways based on category providedReturn a list of pathways based on search term
qtls
Return a QTL for provided RGD IDReturns a list QTL for given position and assembly map
stats-count
Count of objects with given status, for specified species and dateCount of protein interactions, for specified species and dateCount of withdrawn objects by type, for specified species and dateCount of objects with external database ids, by database id, for specified species, object type and dateCount of active objects by type, for specified species and dateCount of objects with reference, by object type, for specified species and dateCount of strains, by qtl inheritance type, for specified species and dateCount of external database ids, for specied species and dateCount of gene types, for specified species and dateCount of retired objects by type, for specified species and dateCount of objects with reference sequence(s), by object type, for specified species and dateCount of strain types, for specified species and date
stats-diff
Count difference of retired objects, by type, for specified species and date rangeCount difference of external database ids, for specified species and date rangeCount difference of objects with reference sequence(s), by object type, for specified species and date rangeCount difference of withdrawn objects, by type, for specified species and date rangeCount difference of active objects, by type, for specified species and date rangeCount difference of objects with reference, by object type, for specified species and date rangeCount difference of strain types, for specified species and date rangeCount difference of gene types, for specified species and date rangeCount difference of objects with given status, for specified species and date rangeCount difference of protein interactions, for specified species and date rangeCount difference of objects with external database ids, by database id, for specified species, object type and date rangeCount difference of strains, by qtl inheritance type, for specified species and date range
stats
getTermStats
strains
Return a strain by RGD IDReturn all active strains by positionReturn all active strains in RGD
Return a list of pathways based on search term and species type. 3=rat 4=chinchilla
Introduction
Rat Genome Database
annotations-count/{acc Id}-{species Type Key}/{include Children}
Returns annotation count for ontology accession ID and object typeReturns annotation count for ontology accession ID and speicies
annotations-count/{acc Id}
Returns annotation count for ontology accession ID
annotations-rgd Id/{rgd Id}
Returns a list of annotations by RGD ID and ontology prefixReturns a list of annotations by RGD ID
annotations-{acc Id}
Returns a list of annotations by RGD ID and ontology term accession IDReturns a list annotations for an ontology term or a term and it's children
annotations
Returns a list of annotations for a referenceReturns a list ontology term accession IDs annotated to an rgd object
genes
Return a list of genes for an alias and speciesReturn a list of all genes with position information for an assemblyReturn a list of gene orthologsReturn a list of genes by keyword and species type keyGet a gene record by RGD IDReturn a list of genes position and map keyGet a gene record by symbol and species type keyReturn a list of genes for an affymetrix IDReturn a list of genes annotated to an ontology termReturn a list of all genes for a species in RGDReturn a list of gene alleles
lookup
Return a Map of species type keys available in RGDReturn a list assembly maps for a speciesReturns a list of gene types avialable in RGD
pathways
Return a list of pathways based on category providedReturn a list of pathways based on search term
qtls
Return a QTL for provided RGD IDReturns a list QTL for given position and assembly map
stats-count
Count of objects with given status, for specified species and dateCount of protein interactions, for specified species and dateCount of withdrawn objects by type, for specified species and dateCount of objects with external database ids, by database id, for specified species, object type and dateCount of active objects by type, for specified species and dateCount of objects with reference, by object type, for specified species and dateCount of strains, by qtl inheritance type, for specified species and dateCount of external database ids, for specied species and dateCount of gene types, for specified species and dateCount of retired objects by type, for specified species and dateCount of objects with reference sequence(s), by object type, for specified species and dateCount of strain types, for specified species and date
stats-diff
Count difference of retired objects, by type, for specified species and date rangeCount difference of external database ids, for specified species and date rangeCount difference of objects with reference sequence(s), by object type, for specified species and date rangeCount difference of withdrawn objects, by type, for specified species and date rangeCount difference of active objects, by type, for specified species and date rangeCount difference of objects with reference, by object type, for specified species and date rangeCount difference of strain types, for specified species and date rangeCount difference of gene types, for specified species and date rangeCount difference of objects with given status, for specified species and date rangeCount difference of protein interactions, for specified species and date rangeCount difference of objects with external database ids, by database id, for specified species, object type and date rangeCount difference of strains, by qtl inheritance type, for specified species and date range
stats
getTermStats
strains
Return a strain by RGD IDReturn all active strains by positionReturn all active strains in RGD
Return a list of pathways based on search term and species type. 3=rat 4=chinchilla
HomeRat Genome Databaseannotations-rgd Id/{rgd Id}

annotations-rgd Id/{rgd Id}

Number of APIs: 2

  1. Returns a list of annotations by RGD ID GET {{baseUrl}}/annotations/rgdId/:rgdId

  2. Returns a list of annotations by RGD ID and ontology prefix GET {{baseUrl}}/annotations/rgdId/:rgdId/:ontologyPrefix

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Returns a list of annotations by RGD ID and ontology prefix