Sequence_GET
GET {{baseUrl}}/Sequence?patient=<string>&_id=<string>&_lastUpdated=<date>&_profile=<string>&_security=<string>&_tag=<string>&chromosome=<string>&coordinate=<string>&end=<double>&identifier=<string>&start=<double>&type=<string>&_format=<string>
Request Params
| Key | Datatype | Required | Description |
|---|---|---|---|
patient | string | The subject that the observation is about | |
_id | string | Logical id of this artifact | |
_lastUpdated | string | When the resource version last changed | |
_profile | string | Profiles this resource claims to conform to | |
_security | string | Security Labels applied to this resource | |
_tag | string | Tags applied to this resource | |
chromosome | string | Chromosome number of the reference sequence | |
coordinate | string | Search parameter for region of the reference DNA sequence string. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as coordinate=1$lt345$gt123, this means it will search for the Sequence resource on chromosome 1 and with position >123 and <345, where in 1-based system resource, all strings within region 1:124-344 will be revealed, while in 0-based system resource, all strings within region 1:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above. | |
end | string | End position (0-based exclusive, which menas the acid at this position will not be included, 1-based inclusive, which means the acid at this position will be included) of the reference sequence. | |
identifier | string | The unique identity for a particular sequence | |
start | string | Start position (0-based inclusive, 1-based inclusive, that means the nucleic acid or amino acid at this position will be included) of the reference sequence. | |
type | string | Amino Acid Sequence/ DNA Sequence / RNA Sequence | |
_format | string |
RESPONSES
status: OK
[{"resourceType":"\u003cstring\u003e","id":"\u003cstring\u003e","text":{"status":"\u003cstring\u003e","div":"\u003cstring\u003e"},"type":"\u003cstring\u003e","patient":{"reference":"\u003cstring\u003e"},"species":{"coding":[{"system":{"value":"\u003cError: Too many levels of nesting to fake this schema\u003e"},"code":{"value":"\u003cError: Too many levels of nesting to fake this schema\u003e"}}],"text":"\u003cstring\u003e"},"referenceSeq":[{"windowStart":"\u003cnumber\u003e","windowEnd":"\u003cnumber\u003e","referenceSeqId":{"coding":[{"system":{"value":"\u003cError: Too many levels of nesting to fake this schema\u003e"},"code":{"value":"\u003cError: Too many levels of nesting to fake this schema\u003e"}}]}}],"variation":{"start":"\u003cnumber\u003e","end":"\u003cnumber\u003e","observedAllele":"\u003cstring\u003e","referenceAllele":"\u003cstring\u003e"},"repository":[{"url":"\u003cstring\u003e","name":"\u003cstring\u003e","variantId":"\u003cstring\u003e"}]},{"resourceType":"\u003cstring\u003e","id":"\u003cstring\u003e","text":{"status":"\u003cstring\u003e","div":"\u003cstring\u003e"},"type":"\u003cstring\u003e","patient":{"reference":"\u003cstring\u003e"},"species":{"coding":[{"system":{"value":"\u003cError: Too many levels of nesting to fake this schema\u003e"},"code":{"value":"\u003cError: Too many levels of nesting to fake this schema\u003e"}}],"text":"\u003cstring\u003e"},"referenceSeq":[{"windowStart":"\u003cnumber\u003e","windowEnd":"\u003cnumber\u003e","referenceSeqId":{"coding":[{"system":{"value":"\u003cError: Too many levels of nesting to fake this schema\u003e"},"code":{"value":"\u003cError: Too many levels of nesting to fake this schema\u003e"}}]}}],"variation":{"start":"\u003cnumber\u003e","end":"\u003cnumber\u003e","observedAllele":"\u003cstring\u003e","referenceAllele":"\u003cstring\u003e"},"repository":[{"url":"\u003cstring\u003e","name":"\u003cstring\u003e","variantId":"\u003cstring\u003e"}]}]